HL_4V4G_478

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_478 not in the Motif Atlas

Homologous match to HL_9DFE_056

Geometric discrepancy: 0.3855

The information below is about HL_9DFE_056

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4G|1|JB|G|2353
4V4G|1|JB|G|2354
4V4G|1|JB|A|2355
4V4G|1|JB|A|2356
4V4G|1|JB|A|2357
4V4G|1|JB|C|2358

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain J3

50S ribosomal protein L33

Chain JP

50S ribosomal protein L18