HL_4V4G_498

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V4G|1|AA|C|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_498 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.5415

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4G|1|AA|C|897
4V4G|1|AA|G|898
4V4G|1|AA|C|899
4V4G|1|AA|A|900
4V4G|1|AA|A|901
4V4G|1|AA|G|902

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L2