HL_4V4G_499

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

4V4G|1|AA|A|1169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_499 not in the Motif Atlas

Homologous match to HL_6CZR_098

Geometric discrepancy: 0.5753

The information below is about HL_6CZR_098

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4G|1|AA|C|1165
4V4G|1|AA|G|1166
4V4G|1|AA|A|1167
4V4G|1|AA|A|1168
4V4G|1|AA|A|1169
4V4G|1|AA|G|1171

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2