HL_4V4G_508

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CACGCUUCGCGUG

Length

13 nucleotides

Bulged bases

4V4G|1|BB|U|1732, 4V4G|1|BB|U|1733, 4V4G|1|BB|U|1738

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|BB|C|1727
4V4G|1|BB|A|1728
4V4G|1|BB|C|1729
4V4G|1|BB|G|1730
4V4G|1|BB|C|1731
4V4G|1|BB|U|1732
4V4G|1|BB|U|1733
4V4G|1|BB|C|1734
4V4G|1|BB|G|1735
4V4G|1|BB|C|1736
4V4G|1|BB|G|1737
4V4G|1|BB|U|1738
4V4G|1|BB|G|1739

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AT

30S ribosomal protein S20