HL_4V4G_562

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UGAAAAAUCACUUUCG

Length

16 nucleotides

Bulged bases

4V4G|1|FB|A|2189, 4V4G|1|FB|A|2190, 4V4G|1|FB|A|2191, 4V4G|1|FB|U|2192, 4V4G|1|FB|C|2195, 4V4G|1|FB|U|2196, 4V4G|1|FB|U|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|FB|U|2185
4V4G|1|FB|G|2186
4V4G|1|FB|A|2187
4V4G|1|FB|A|2188
4V4G|1|FB|A|2189
4V4G|1|FB|A|2190
4V4G|1|FB|A|2191
4V4G|1|FB|U|2192
4V4G|1|FB|C|2193
4V4G|1|FB|A|2194
4V4G|1|FB|C|2195
4V4G|1|FB|U|2196
4V4G|1|FB|U|2197
4V4G|1|FB|U|2198
4V4G|1|FB|C|2199
4V4G|1|FB|G|2200

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F1

50S ribosomal protein L31

Chain FD

50S ribosomal protein L2

Chain FI

50S ribosomal protein L9