HL_4V4G_585

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

4V4G|1|HB|U|1409, 4V4G|1|HB|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_585 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.5433

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4G|1|HB|G|1402
4V4G|1|HB|U|1403
4V4G|1|HB|C|1404
4V4G|1|HB|A|1405
4V4G|1|HB|A|1406
4V4G|1|HB|G|1407
4V4G|1|HB|A|1408
4V4G|1|HB|U|1409
4V4G|1|HB|U|1410
4V4G|1|HB|C|1411

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HU

50S ribosomal protein L23