HL_4V4H_056
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- UGUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 4V4H|1|BB|U|747, 4V4H|1|BB|A|751, 4V4H|1|BB|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4H_056 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1042
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V4H|1|BB|U|744
4V4H|1|BB|G|745
4V4H|1|BB|U|746
4V4H|1|BB|U|747
4V4H|1|BB|G|748
4V4H|1|BB|A|749
4V4H|1|BB|A|750
4V4H|1|BB|A|751
4V4H|1|BB|A|752
4V4H|1|BB|A|753
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B0
- 50S RIBOSOMAL PROTEIN L32
- Chain B2
- 50S RIBOSOMAL PROTEIN L34
- Chain BD
- 50S RIBOSOMAL PROTEIN L3
- Chain BS
- 50S RIBOSOMAL PROTEIN L22
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