HL_4V4H_061

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_061 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.3685

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4H|1|BB|G|978
4V4H|1|BB|A|979
4V4H|1|BB|A|980
4V4H|1|BB|A|981
4V4H|1|BB|C|982
4V4H|1|BB|A|983
4V4H|1|BB|A|984
4V4H|1|BB|C|985

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L20