HL_4V4H_086

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

4V4H|1|BB|A|2211, 4V4H|1|BB|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_086 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.2544

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81964.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

4V4H|1|BB|G|2209
4V4H|1|BB|U|2210
4V4H|1|BB|A|2211
4V4H|1|BB|A|2212
4V4H|1|BB|U|2213
4V4H|1|BB|C|2214
4V4H|1|BB|C|2215

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BZ

50S RIBOSOMAL PROTEIN L31