HL_4V4H_141

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V4H|1|DB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_141 not in the Motif Atlas

Homologous match to HL_8B0X_036

Geometric discrepancy: 0.5878

The information below is about HL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

4V4H|1|DB|U|137
4V4H|1|DB|U|138
4V4H|1|DB|U|139
4V4H|1|DB|C|140
4V4H|1|DB|G|141
4V4H|1|DB|A|142

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DT

50S RIBOSOMAL PROTEIN L23