HL_4V4H_150

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V4H|1|DB|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_150 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0861

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4H|1|DB|G|410
4V4H|1|DB|G|411
4V4H|1|DB|A|412
4V4H|1|DB|C|413
4V4H|1|DB|C|414
4V4H|1|DB|A|415
4V4H|1|DB|U|416
4V4H|1|DB|C|417

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains