HL_4V4H_167

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

4V4H|1|DB|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_167 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3114

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

4V4H|1|DB|C|1172
4V4H|1|DB|U|1173
4V4H|1|DB|U|1174
4V4H|1|DB|A|1175
4V4H|1|DB|U|1176
4V4H|1|DB|G|1177

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains