HL_4V4Q_040

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V4Q|1|BB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_040 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0894

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4Q|1|BB|G|194
4V4Q|1|BB|A|195
4V4Q|1|BB|A|196
4V4Q|1|BB|A|197
4V4Q|1|BB|C|198
4V4Q|1|BB|A|199
4V4Q|1|BB|U|200
4V4Q|1|BB|C|201

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L31