HL_4V4Q_047
3D structure
- PDB id
- 4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GGACCAUC
- Length
- 8 nucleotides
- Bulged bases
- 4V4Q|1|BB|G|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4Q_047 not in the Motif Atlas
- Homologous match to HL_5J7L_146
- Geometric discrepancy: 0.0733
- The information below is about HL_5J7L_146
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4V4Q|1|BB|G|410
4V4Q|1|BB|G|411
4V4Q|1|BB|A|412
4V4Q|1|BB|C|413
4V4Q|1|BB|C|414
4V4Q|1|BB|A|415
4V4Q|1|BB|U|416
4V4Q|1|BB|C|417
Current chains
- Chain BB
- 23S ribosomal RNA
Nearby chains
- Chain BL
- 50S ribosomal protein L15
Coloring options: