HL_4V4Q_136

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

4V4Q|1|DA|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_136 not in the Motif Atlas

Homologous match to HL_7RQB_070

Geometric discrepancy: 0.1545

The information below is about HL_7RQB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87939.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4Q|1|DA|C|38
4V4Q|1|DA|A|39
4V4Q|1|DA|U|40
4V4Q|1|DA|G|41
4V4Q|1|DA|C|42
4V4Q|1|DA|C|43
4V4Q|1|DA|G|44

Current chains

Chain DA

5S ribosomal RNA

Nearby chains

Chain DB

Large subunit ribosomal RNA; LSU rRNA

Chain DF

50S ribosomal protein L5

Chain DO

50S ribosomal protein L18