HL_4V4Q_137

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_137 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3842

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V4Q|1|DA|G|86
4V4Q|1|DA|U|87
4V4Q|1|DA|C|88
4V4Q|1|DA|U|89
4V4Q|1|DA|C|90

Current chains

Chain DA

5S ribosomal RNA

Nearby chains

Chain DB

Large subunit ribosomal RNA; LSU rRNA

Chain DM

50S ribosomal protein L16