HL_4V4Q_140

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4V4Q|1|DB|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_140 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1346

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V4Q|1|DB|G|123
4V4Q|1|DB|G|124
4V4Q|1|DB|A|125
4V4Q|1|DB|A|126
4V4Q|1|DB|A|127
4V4Q|1|DB|C|128

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23