HL_4V4Q_141

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V4Q|1|DB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_141 not in the Motif Atlas

Geometric match to HL_7MLW_002

Geometric discrepancy: 0.3733

The information below is about HL_7MLW_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V4Q|1|DB|U|137
4V4Q|1|DB|U|138
4V4Q|1|DB|U|139
4V4Q|1|DB|C|140
4V4Q|1|DB|G|141
4V4Q|1|DB|A|142

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DT

50S ribosomal protein L23