HL_4V4Q_164

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Q_164 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2056

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4Q|1|DB|G|978
4V4Q|1|DB|A|979
4V4Q|1|DB|A|980
4V4Q|1|DB|A|981
4V4Q|1|DB|C|982
4V4Q|1|DB|A|983
4V4Q|1|DB|A|984
4V4Q|1|DB|C|985

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DY

50S ribosomal protein L30