HL_4V4R_007

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_007 not in the Motif Atlas

Homologous match to HL_6CZR_078

Geometric discrepancy: 0.1448

The information below is about HL_6CZR_078

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4R|1|AA|U|296
4V4R|1|AA|G|297
4V4R|1|AA|A|298
4V4R|1|AA|G|299
4V4R|1|AA|A|300
4V4R|1|AA|G|301

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AE

30S ribosomal protein S5

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17