HL_4V4R_035

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

4V4R|1|AW|U|16, 4V4R|1|AW|U|17, 4V4R|1|AW|G|18, 4V4R|1|AW|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_035 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2104

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4R|1|AW|C|13
4V4R|1|AW|A|14
4V4R|1|AW|G|15
4V4R|1|AW|U|16
4V4R|1|AW|U|17
4V4R|1|AW|G|18
4V4R|1|AW|G|19
4V4R|1|AW|G|20
4V4R|1|AW|A|21
4V4R|1|AW|G|22

Current chains

Chain AW

E-site tRNA (Phe)

Nearby chains