HL_4V4R_042

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V4R|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_042 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.2153

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V4R|1|BA|G|194
4V4R|1|BA|A|195
4V4R|1|BA|A|196
4V4R|1|BA|A|197
4V4R|1|BA|C|198
4V4R|1|BA|A|199
4V4R|1|BA|U|200
4V4R|1|BA|C|201

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain B8

50S ribosomal protein L35