HL_4V4R_101

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GGCGUCAAGC

Length

10 nucleotides

Bulged bases

4V4R|1|BA|G|2795, 4V4R|1|BA|C|2798, 4V4R|1|BA|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_101 not in the Motif Atlas

Homologous match to HL_7A0S_066

Geometric discrepancy: 0.2856

The information below is about HL_7A0S_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4R|1|BA|G|2792
4V4R|1|BA|G|2793
4V4R|1|BA|C|2794
4V4R|1|BA|G|2795
4V4R|1|BA|U|2797
4V4R|1|BA|C|2798
4V4R|1|BA|A|2799
4V4R|1|BA|A|2801
4V4R|1|BA|G|2802
4V4R|1|BA|C|2803

Current chains

Chain BA

23S ribosomal RNA

Nearby chains