HL_4V4R_115

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4V4R|1|BA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_115 not in the Motif Atlas

Homologous match to HL_9DFE_039

Geometric discrepancy: 0.421

The information below is about HL_9DFE_039

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4V4R|1|BA|C|630|||A
4V4R|1|BA|A|1631
4V4R|1|BA|A|1632
4V4R|1|BA|G|1633
4V4R|1|BA|A|1634
4V4R|1|BA|G|1635

Current chains

Chain BA

23S ribosomal RNA

Nearby chains