HL_4V4R_119

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

4V4R|1|BA|G|2529, 4V4R|1|BA|A|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4R_119 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.362

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V4R|1|BA|C|2527
4V4R|1|BA|U|2528
4V4R|1|BA|G|2529
4V4R|1|BA|A|2530
4V4R|1|BA|A|2531
4V4R|1|BA|G|2532
4V4R|1|BA|A|2533
4V4R|1|BA|A|2534
4V4R|1|BA|G|2535
4V4R|1|BA|G|2536

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6