HL_4V4T_033
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- 4V4T|1|AV|G|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4T_033 not in the Motif Atlas
- Homologous match to HL_4WT8_216
- Geometric discrepancy: 0.2649
- The information below is about HL_4WT8_216
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V4T|1|AV|A|31
4V4T|1|AV|C|32
4V4T|1|AV|U|33
4V4T|1|AV|G|34
4V4T|1|AV|A|35
4V4T|1|AV|A|36
4V4T|1|AV|G|37
4V4T|1|AV|A|38
4V4T|1|AV|U|39
Current chains
- Chain AV
- P-site tRNA (Phe)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AM
- 30S ribosomal protein S13
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- 5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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