HL_4V4T_084

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V4T|1|BA|A|2030, 4V4T|1|BA|A|2031, 4V4T|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4T_084 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2747

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4T|1|BA|G|2027
4V4T|1|BA|U|2028
4V4T|1|BA|G|2029
4V4T|1|BA|A|2030
4V4T|1|BA|A|2031
4V4T|1|BA|G|2032
4V4T|1|BA|A|2033
4V4T|1|BA|U|2034
4V4T|1|BA|G|2035
4V4T|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13