HL_4V4T_094

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

4V4T|1|BA|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4T_094 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.2563

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4T|1|BA|C|2471
4V4T|1|BA|G|2472
4V4T|1|BA|U|2473
4V4T|1|BA|C|2474
4V4T|1|BA|C|2475
4V4T|1|BA|A|2476
4V4T|1|BA|C|2477
4V4T|1|BA|A|2478
4V4T|1|BA|G|2479

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36