HL_4V4X_012

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4V4X|1|AA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.238

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4X|1|AA|C|458
4V4X|1|AA|G|464
4V4X|1|AA|A|465
4V4X|1|AA|C|466
4V4X|1|AA|G|467
4V4X|1|AA|A|468
4V4X|1|AA|G|474

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16