HL_4V4X_018

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

4V4X|1|AA|U|841, 4V4X|1|AA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_018 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.2374

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V4X|1|AA|G|838
4V4X|1|AA|U|841
4V4X|1|AA|C|842
4V4X|1|AA|U|843
4V4X|1|AA|C|848

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S2