HL_4V4X_028

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_028 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3205

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4X|1|AA|G|1265
4V4X|1|AA|G|1266
4V4X|1|AA|C|1267
4V4X|1|AA|A|1268
4V4X|1|AA|A|1269
4V4X|1|AA|C|1270

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S13

Chain AV

30S ribosomal protein S19

Chain AX

30S ribosomal protein Thx