HL_4V4X_034

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_034 not in the Motif Atlas

Homologous match to HL_4WT8_216

Geometric discrepancy: 0.1968

The information below is about HL_4WT8_216

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V4X|1|AC|G|31
4V4X|1|AC|C|32
4V4X|1|AC|U|33
4V4X|1|AC|C|34
4V4X|1|AC|A|35
4V4X|1|AC|U|36
4V4X|1|AC|A|37
4V4X|1|AC|A|38
4V4X|1|AC|C|39

Current chains

Chain AC

tRNA fMET (unmodified bases)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AL

30S ribosomal protein S9

Chain AP

30S ribosomal protein S13