HL_4V4X_051

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_051 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.5528

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4X|1|BA|G|382
4V4X|1|BA|U|383
4V4X|1|BA|U|384
4V4X|1|BA|C|385
4V4X|1|BA|G|386
4V4X|1|BA|U|387
4V4X|1|BA|G|388
4V4X|1|BA|G|389
4V4X|1|BA|A|390
4V4X|1|BA|G|391
4V4X|1|BA|C|392

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B3

50S ribosomal protein L31

Chain BO

50S ribosomal protein L15