3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
4V4X|1|BA|U|1396
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4X_073 not in the Motif Atlas
Homologous match to HL_5J7L_168
Geometric discrepancy: 0.2668
The information below is about HL_5J7L_168
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81545.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V4X|1|BA|G|1389
4V4X|1|BA|U|1390
4V4X|1|BA|U|1391
4V4X|1|BA|A|1392
4V4X|1|BA|A|1393
4V4X|1|BA|U|1394
4V4X|1|BA|A|1395
4V4X|1|BA|U|1396
4V4X|1|BA|U|1397
4V4X|1|BA|C|1398

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BW
50S ribosomal protein L23

Coloring options:


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