HL_4V4X_087

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V4X|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_087 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.3642

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4X|1|BA|G|2027
4V4X|1|BA|U|2028
4V4X|1|BA|G|2029
4V4X|1|BA|A|2030
4V4X|1|BA|A|2031
4V4X|1|BA|G|2032
4V4X|1|BA|A|2033
4V4X|1|BA|U|2034
4V4X|1|BA|G|2035
4V4X|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BT

50S ribosomal protein L20