HL_4V4X_105

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4V4X|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_105 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.2398

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4X|1|BA|G|2819
4V4X|1|BA|A|2820
4V4X|1|BA|A|2821
4V4X|1|BA|G|2822
4V4X|1|BA|A|2823
4V4X|1|BA|C|2824
4V4X|1|BA|C|2825
4V4X|1|BA|A|2826
4V4X|1|BA|C|2827

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BQ

50S ribosomal protein L17

Chain BS

50S ribosomal protein L19