HL_4V4Y_005

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

4V4Y|1|AA|U|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_005 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.4955

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V4Y|1|AA|C|201
4V4Y|1|AA|U|208
4V4Y|1|AA|U|209
4V4Y|1|AA|U|210
4V4Y|1|AA|G|216

Current chains

Chain AA

16S ribosomal RNA

Nearby chains