HL_4V4Y_008

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1857

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V4Y|1|AA|C|320
4V4Y|1|AA|A|321
4V4Y|1|AA|C|322
4V4Y|1|AA|U|323
4V4Y|1|AA|G|324
4V4Y|1|AA|A|325
4V4Y|1|AA|G|326
4V4Y|1|AA|A|327
4V4Y|1|AA|C|328
4V4Y|1|AA|A|329
4V4Y|1|AA|C|330
4V4Y|1|AA|G|331
4V4Y|1|AA|G|332
4V4Y|1|AA|G|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S ribosomal protein S20