HL_4V4Y_040

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UUGAAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_040 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.3034

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V4Y|1|AD|U|32
4V4Y|1|AD|U|33
4V4Y|1|AD|G|34
4V4Y|1|AD|A|35
4V4Y|1|AD|A|36
4V4Y|1|AD|A|37
4V4Y|1|AD|A|38

Current chains

Chain AD

tRNA PHE (unmodified bases)

Nearby chains

Chain A1

mRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AC

Transfer RNA; tRNA

Chain AJ

30S ribosomal protein S7

Chain AN

30S ribosomal protein S11