HL_4V4Y_066

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_066 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.5813

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|C|884
4V4Y|1|BA|C|885
4V4Y|1|BA|C|886
4V4Y|1|BA|A|887
4V4Y|1|BA|C|888
4V4Y|1|BA|C|889
4V4Y|1|BA|A|890
4V4Y|1|BA|G|892

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S13