HL_4V4Y_075

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_075 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3127

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V4Y|1|BA|C|1362
4V4Y|1|BA|C|1363
4V4Y|1|BA|G|1364
4V4Y|1|BA|A|1365
4V4Y|1|BA|A|1366
4V4Y|1|BA|A|1367
4V4Y|1|BA|G|1368
4V4Y|1|BA|G|1369

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L31

Chain B6

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2