HL_4V4Y_076

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V4Y|1|BA|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_076 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.2939

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4Y|1|BA|G|1389
4V4Y|1|BA|U|1390
4V4Y|1|BA|U|1391
4V4Y|1|BA|A|1392
4V4Y|1|BA|A|1393
4V4Y|1|BA|U|1394
4V4Y|1|BA|A|1395
4V4Y|1|BA|U|1396
4V4Y|1|BA|U|1397
4V4Y|1|BA|C|1398

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L23