HL_4V4Y_077

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V4Y|1|BA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|C|1450
4V4Y|1|BA|C|1451
4V4Y|1|BA|A|1453
4V4Y|1|BA|U|1454
4V4Y|1|BA|G|1455
4V4Y|1|BA|G|1456
4V4Y|1|BA|A|1457
4V4Y|1|BA|C|1458
4V4Y|1|BA|G|1459
4V4Y|1|BA|A|1460
4V4Y|1|BA|G|1461

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L17