HL_4V4Y_080

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V4Y|1|BA|A|1614, 4V4Y|1|BA|A|1616, 4V4Y|1|BA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_080 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.2556

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4Y|1|BA|C|1612
4V4Y|1|BA|G|1613
4V4Y|1|BA|A|1614
4V4Y|1|BA|C|1615
4V4Y|1|BA|A|1616
4V4Y|1|BA|C|1617
4V4Y|1|BA|A|1618
4V4Y|1|BA|G|1619

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BV

50S ribosomal protein L22