HL_4V4Y_088

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UAACUAUAA

Length

9 nucleotides

Bulged bases

4V4Y|1|BA|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|U|1911
4V4Y|1|BA|A|1912
4V4Y|1|BA|A|1913
4V4Y|1|BA|C|1914
4V4Y|1|BA|U|1915
4V4Y|1|BA|A|1916
4V4Y|1|BA|U|1917
4V4Y|1|BA|A|1918
4V4Y|1|BA|A|1919

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AB

Transfer RNA; tRNA