HL_4V4Y_107

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4V4Y|1|BA|G|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_107 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3227

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V4Y|1|BA|C|2794
4V4Y|1|BA|G|2795
4V4Y|1|BA|U|2797
4V4Y|1|BA|C|2798
4V4Y|1|BA|A|2799
4V4Y|1|BA|A|2801
4V4Y|1|BA|G|2802

Current chains

Chain BA

23S ribosomal RNA

Nearby chains