HL_4V4Z_012

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4V4Z|1|AA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.2478

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4Z|1|AA|C|458
4V4Z|1|AA|G|464
4V4Z|1|AA|A|465
4V4Z|1|AA|C|466
4V4Z|1|AA|G|467
4V4Z|1|AA|A|468
4V4Z|1|AA|G|474

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16