HL_4V4Z_036

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

4V4Z|1|AD|U|16, 4V4Z|1|AD|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_036 not in the Motif Atlas

Homologous match to HL_6GSL_220

Geometric discrepancy: 0.5113

The information below is about HL_6GSL_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|AD|C|13
4V4Z|1|AD|A|14
4V4Z|1|AD|G|15
4V4Z|1|AD|U|16
4V4Z|1|AD|U|17
4V4Z|1|AD|G|18
4V4Z|1|AD|G|19
4V4Z|1|AD|U|20
4V4Z|1|AD|A|21
4V4Z|1|AD|G|22

Current chains

Chain AD

tRNA PHE (unmodified bases)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S RIBOSOMAL PROTEIN L1