HL_4V4Z_053

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_053 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.1813

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4Z|1|BA|C|487
4V4Z|1|BA|G|488
4V4Z|1|BA|G|489
4V4Z|1|BA|G|491
4V4Z|1|BA|A|492
4V4Z|1|BA|G|493

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S RIBOSOMAL PROTEIN L22