HL_4V4Z_073

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V4Z|1|BA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_073 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3496

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4Z|1|BA|C|1450
4V4Z|1|BA|C|1451
4V4Z|1|BA|A|1453
4V4Z|1|BA|U|1454
4V4Z|1|BA|G|1455
4V4Z|1|BA|G|1456
4V4Z|1|BA|A|1457
4V4Z|1|BA|C|1458
4V4Z|1|BA|G|1459
4V4Z|1|BA|A|1460
4V4Z|1|BA|G|1461

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L17